The gto_char_to_line splits a sequence into lines, creating an output sequence which has a char for each line.
For help type:
./gto_char_to_line -h
In the following subsections, we explain the input and output paramters.
The gto_char_to_line program needs two streams for the computation, namely the input and output standard. The input stream is a sequence file.
The attribution is given according to:
Usage: ./gto_char_to_line [options] [[--] args]
or: ./gto_char_to_line [options]
It splits a sequence into lines, creating an output sequence which has a char for each line.
-h, --help show this help message and exit
Basic options
< input.seq Input sequence file (stdin)
> output.seq Output sequence file (stdout)
Example: ./gto_char_to_line < input.seq > output.seq
An example of such an input file is:
ACAAGACGGCCTCCTGCTGCTGCTGCTCTCCGGGGCCACGGCCCTGGAGGGTCCACCGCTGCCCTGCTGCCATTGTCCCC
GGCCCCACCTAAGGAAAAGCAGCCTCCTGACTTTCCTCGCTTGGGCCGAGACAGCGAGCATATGCAGGAAGCGGCAGGAA
GTGGTTTGAGTGGACCTCCGGGCCCCTCATAGGAGAGGAAGCTCGGGAGGTGGCCAGGCGGCAGGAAGCAGGCCAGTGCC
GCGAATCCGCGCGCCGGGACAGAATCTCCTGCAAAGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCACCCCCCCAGC
TAAAACCTCACCCATGAATGCTCACGCAAGTTTAATTACAGACCTGAAACAAGATGCCATTGTCCCCCGGCCTCCTGCTG
CTGCTGCTCTCCGGGGCCACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCGGCCGAGACAGCGAGCATATGCA
GGAAGCGGCAGGAATAAGGAAAAGCAGCCTCCTGACTTTCCTCGCTTGGTGGTTTGAGTGGACCTCCCAGGCCAGTGCCG
GGCCCCTCATAGGAGAGGAAGCTCGGGAGGTGGCCAGGCGGCAGGAAGGCGCACCCCCCCAGCAATCCGCGCGCCGGGAC
AGAATGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCTCCTGCAAATAAAACCTCACCCATGAATGCTCACGCAAGTT
TAATTACAGACCTGAA
The output of the gto_char_to_line program is a group sequence splited by \textbackslash n foreach character.
Using the input above, an output example for this is the following:
A
C
A
A
G
A
C
G
G
C
C
T
C
C
T
G
C
T
G
C
T
...