The gto_genomic_gen_random_dna generates a synthetic DNA.
For help type:
./gto_genomic_gen_random_dna -h
In the following subsections, we explain the input and output paramters.
The gto_genomic_gen_random_dna program needs one stream for the computation, namely the output standard.
The attribution is given according to:
Usage: ./gto_genomic_gen_random_dna [options] [[--] args]
or: ./gto_genomic_gen_random_dna [options]
It generates a synthetic DNA.
-h, --help show this help message and exit
Basic options
> output.seq Output synthetic DNA sequence (stdout)
Optional
-s, --seed= Starting point to the random generator (Default 0)
-n, --nSymbols= Number of symbols generated (Default 100)
-f, --frequency= The frequency of each base. It should be represented
in the following format: .
Example: ./gto_genomic_gen_random_dna -s -n -f > output.seq
The output of the gto_genomic_gen_random_dna program is a sequence group file whith the synthetic DNA.
Using the input above with the seed value as 1 and the number of symbols as 400, an output example for this is the following:
TCTTTACTCGCGCGTTGGAGAAATACAATAGTGCGGCTCTGTCTCCTTATGAAGTCAACAATTTCGCTGGGACTTGCGGC
TCTTTACTCGCGCGTTGGAGAAATACAATAGTGCGGCTCTGTCTCCTTATGAAGTCAACAATTTCGCTGGGACTTGCGGC
GACTTCATCGTGGTCTCTGTCATTATGCGCTCCAACGCATAACTTTGCGCCAGAAGATAGATAGAATGGTGTAAGAAACT
GTAATATATATAATGAACTTCGGCGAGTCTGTGGAGTTTTTGTTGCATTAGAGAGCCAAGAGGTCGGACGTCCTCACGTA
GCCCGAGACGGGCAGGGCGATGGCGACTGAACGGGCTCCATATCACTTTGAGCTTTTATGCTTTCGACTCCTCCAGGAGC
TGAACAACCTTGTTCCCGGCAAAGCCCACTGCGTCATGGAGCTCACGGTCTACATTCATGACTGACTAACCGTAAACTGC