The gto_genomic_rand_seq_extra_chars substitues in the DNA sequence the outside ACGT chars by random ACGT symbols. It works in sequence file formats.
For help type:
./gto_genomic_rand_seq_extra_chars -h
In the following subsections, we explain the input and output paramters.
The gto_genomic_rand_seq_extra_chars program needs two streams for the computation, namely the input and output standard. The input stream is a sequence file.
The attribution is given according to:
Usage: ./gto_genomic_rand_seq_extra_chars [options] [[--] args]
or: ./gto_genomic_rand_seq_extra_chars [options]
It substitues in the DNA sequence the outside ACGT chars by random ACGT symbols.
It works in sequence file formats
-h, --help show this help message and exit
Basic options
< input.seq Input sequence file (stdin)
> output.seq Output sequence file (stdout)
Example: ./gto_genomic_rand_seq_extra_chars < input.seq > output.seq
An example of such an input file is:
ANAAGACGNNNTCCTGCTGCTGCTGCTCTCCGGGGCCACGGCCCTGGAGGGTCCACCGCTGCCCTGCTGCCATTGTCCCC
NNCCCCACCTAAGGAAAAGCAGCCTCCTGACTTTCCTCGCTTGGGCCGAGACAGCGAGCATATGCAGGAAGCGGCAGGAA
GTGGTTTGAGTGGACCTCCGGGCCCCNNNNNGGAGAGGAAGCTCGGGAGNGTNNNGGCCAGGCGGCAGNNNNCCAGTGCC
GCGAATCCGCGCGCCGGGACAGAATCTCCTGCAAAGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCACCCCCCCAGC
TANNNNCTCACCCATGAATGCTCACGCAAGTTTAATTACAGACCTGAAACAAGATGCCATTGTCCCCCGGCCTCCTGCTG
CTGCTGCTCTCCGGGGCCACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCGGCCGAGACAGCGAGCATATGCA
GGAAGCGGCAGGAATAAGNNNAAGCAGCCTCCTGACTTTCCTCGCTTGNNNNTTTGAGTGGACCTCCCAGGCCAGTGCCG
GGCCCCTCATAGGAGAGGAAGCTCGGGAGGTGGCCAGGCGGCAGGAAGGCGCACCCCCCCAGCAATCCGCGCGCCGGGAC
AGAATGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCTCCTGCAAATAAAACCTCACCCATGAATGCTCACGCAAGTT
NNATTACNNNCCTGNN
The output of the gto_genomic_rand_seq_extra_chars program is a sequence file.
Using the input above, an output example for this is the following:
ATAAGACGGCTTCCTGCTGCTGCTGCTCTCCGGGGCCACGGCCCTGGAGGGTCCACCGCTGCCCTGCTGCCATTGTCCCC
CTCCCCACCTAAGGAAAAGCAGCCTCCTGACTTTCCTCGCTTGGGCCGAGACAGCGAGCATATGCAGGAAGCGGCAGGAA
GTGGTTTGAGTGGACCTCCGGGCCCCGACCGGGAGAGGAAGCTCGGGAGTGTGTTGGCCAGGCGGCAGGAGACCAGTGCC
GCGAATCCGCGCGCCGGGACAGAATCTCCTGCAAAGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCACCCCCCCAGC
TAATATCTCACCCATGAATGCTCACGCAAGTTTAATTACAGACCTGAAACAAGATGCCATTGTCCCCCGGCCTCCTGCTG
CTGCTGCTCTCCGGGGCCACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCGGCCGAGACAGCGAGCATATGCA
GGAAGCGGCAGGAATAAGCGGAAGCAGCCTCCTGACTTTCCTCGCTTGGTTTTTTGAGTGGACCTCCCAGGCCAGTGCCG
GGCCCCTCATAGGAGAGGAAGCTCGGGAGGTGGCCAGGCGGCAGGAAGGCGCACCCCCCCAGCAATCCGCGCGCCGGGAC
AGAATGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCTCCTGCAAATAAAACCTCACCCATGAATGCTCACGCAAGTT
CGATTACGGCCCTGTC