The gto_genomic_reverse reverses the ACGT bases order for each read in a sequence file.
For help type:
./gto_genomic_reverse -h
In the following subsections, we explain the input and output paramters.
The gto_genomic_reverse program needs two streams for the computation, namely the input and output standard. The input stream is a sequence file.
The attribution is given according to:
Usage: ./gto_genomic_reverse [options] [[--] args]
or: ./gto_genomic_reverse [options]
It reverses the ACGT bases order for each read in a sequence file.
-h, --help show this help message and exit
Basic options
< input.seq Input sequence file (stdin)
> output.seq Output sequence file (stdout)
Example: ./gto_genomic_reverse < input.seq > output.seq
An example of such an input file is:
ACAAGACGGCCTCCTGCTGCTGCTGCTCTCCGGGGCCACGGCCCTGGAGGGTCCACCGCTGCCCTGCTGCCATTGTCCCC
GGCCCCACCTAAGGAAAAGCAGCCTCCTGACTTTCCTCGCTTGGGCCGAGACAGCGAGCATATGCAGGAAGCGGCAGGAA
GTGGTTTGAGTGGACCTCCGGGCCCCTCATAGGAGAGGAAGCTCGGGAGGTGGCCAGGCGGCAGGAAGCAGGCCAGTGCC
GCGAATCCGCGCGCCGGGACAGAATCTCCTGCAAAGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCACCCCCCCAGC
TAAAACCTCACCCATGAATGCTCACGCAAGTTTAATTACAGACCTGAAACAAGATGCCATTGTCCCCCGGCCTCCTGCTG
CTGCTGCTCTCCGGGGCCACGGCCACCGCTGCCCTGCCCCTGGAGGGTGGCCCCACCGGCCGAGACAGCGAGCATATGCA
GGAAGCGGCAGGAATAAGGAAAAGCAGCCTCCTGACTTTCCTCGCTTGGTGGTTTGAGTGGACCTCCCAGGCCAGTGCCG
GGCCCCTCATAGGAGAGGAAGCTCGGGAGGTGGCCAGGCGGCAGGAAGGCGCACCCCCCCAGCAATCCGCGCGCCGGGAC
AGAATGCCCTGCAGGAACTTCTTCTGGAAGACCTTCTCCTCCTGCAAATAAAACCTCACCCATGAATGCTCACGCAAGTT
TAATTACAGACCTGAA
The output of the gto_genomic_reverse program is a group sequence.
Using the input above, an output example for this is the following:
AAGTCCAGACATTAATTTGAACGCACTCGTAAGTACCCACTCCAAAATAAACGTCCTCCTCTTCCAGAAGGTCTTCTTCA
AGGACGTCCCGTAAGACAGGGCCGCGCGCCTAACGACCCCCCCACGCGGAAGGACGGCGGACCGGTGGAGGGCTCGAAGG
AGAGGATACTCCCCGGGCCGTGACCGGACCCTCCAGGTGAGTTTGGTGGTTCGCTCCTTTCAGTCCTCCGACGAAAAGGA
ATAAGGACGGCGAAGGACGTATACGAGCGACAGAGCCGGCCACCCCGGTGGGAGGTCCCCGTCCCGTCGCCACCGGCACC
GGGGCCTCTCGTCGTCGTCGTCCTCCGGCCCCCTGTTACCGTAGAACAAAGTCCAGACATTAATTTGAACGCACTCGTAA
GTACCCACTCCAAAATCGACCCCCCCACCTCTTCCAGAAGGTCTTCTTCAAGGACGTCCCGAAACGTCCTCTAAGACAGG
GCCGCGCGCCTAAGCGCCGTGACCGGACGAAGGACGGCGGACCGGTGGAGGGCTCGAAGGAGAGGATACTCCCCGGGCCT
CCAGGTGAGTTTGGTGAAGGACGGCGAAGGACGTATACGAGCGACAGAGCCGGGTTCGCTCCTTTCAGTCCTCCGACGAA
AAGGAATCCACCCCGGCCCCTGTTACCGTCGTCCCGTCGCCACCTGGGAGGTCCCGGCACCGGGGCCTCTCGTCGTCGTC
GTCCTCCGGCAGAACA